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    Black Bean and Butternut Squash Casserole

    By Julia | Updated: Jul 04, 2023 | Published: Nov 15, 2014 | 188 Comments

    255.6K shares
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    Black Bean and Butternut Squash Casserole - meatless and gluten-free dinner recipe! This Southwestern-style enchilada casserole is made with lots of vegetables and corn tortillas.

    black bean butternut squash enchilada casserole

    I love making recipes with butternut squash in a casserole dish, such as everyone's favorite butternut squash and spinach lasagna.  Butternut squash is a great vegetable with a rich flavor which works great in meatless recipes!  Take a look at beautiful butternut squash tortellini.

    Butternut Squash Casserole - meatless and gluten-free recipe

    • The vegetables are roasted in spices (cumin and chili powder). That adds lots of Southwestern flavor!
    • Other ingredients include green and red bell peppers, corn, salsa, enchilada sauce, sour cream, Mozzarella cheese, and corn tortillas.

    How to make butternut squash casserole gluten free

    • This recipe is gluten-free.  Use corn tortillas, and all other ingredients are also naturally gluten-free.
    • Use gluten-free enchilada sauce.  Keep in mind that some store-bought enchilada sauces can have gluten ingredients. So look carefully at the label.   You can also make your own gluten-free enchilada sauce or skip it in this recipe.

    Black Bean Butternut Squash Enchilada Casserole

    How to store butternut squash casserole

    • Store butternut squash casserole refrigerated and covered air-tight for up to 5 days.
    • This black bean and butternut squash enchilada casserole is amazing when hot right out of the oven.  It tastes even better the next day, or 3-4 days later! I just finished the last slice of this casserole 5 days later, and I can tell you that it was better than the 1st day! I guess all the flavors really blend while sitting in the refrigerator for days. 🙂

    enchilada casserole with sour cream, enchilada sauce, salsa, mozzarella cheese, black beans, butternut squash

    Other butternut squash recipes

    • Roasted Butternut Squash, Brussels Sprouts, Pecans, Cranberries
    • Butternut Squash and Spinach Salad with Pecans, Cranberries, Pomegranate Seeds
    • Butternut Squash Chili

    How to make black bean and butternut squash casserole:

    1) Heat 1 tablespoon olive oil in a large skillet on medium-high heat.

    2) Add chopped onion, chopped green bell pepper and chopped red bell pepper, and seasonings.

    3) Add corn to the skillet and roast the vegetables in olive oil on high heat until charred a bit.

    4) Add rinsed black beans.

    5) Add roasted butternut squash.

    6) Mix all vegetables, add more spices and salt, if needed.

    Mixing all vegetables for Mexican enchilada casserole, all clad pans, all-clad skillet, Williams-Sonoma pans, Williams-Sonoma skillet

    7) I used a casserole dish 11 inches x 8.5 inches x 3 inches deep. Add 1 cup of salsa to the bottom of the 3-inch deep casserole dish and spread to coat the bottom evenly.

    Put salsa on the bottom of the white baking dish

    8)  Start layers.  Layer 1: Place 4 corn tortillas over the salsa, overlapping to cover the bottom of the casserole dish.

    Place 4 corn tortillas over salsa

    9) Spread ⅓ of the vegetable mixture over the corn tortillas.

    Spread roasted vegetables over the tortillas in a white baking pan

    10) Top with ½ cup sour cream, dropping it in small dollops all over.  Then spread it carefully over the veggies.

    Spread sour cream over the roasted vegetables

    11) Pour ½ cup enchilada sauce evenly all over, spreading sour cream evenly all over.

    Pour enchilada sauce over the sour cream in the casserole dish

    12) Sprinkle with ½ cup Mozzarella cheese.

    Sprinkle Mozzarella cheese over sour cream and roasted veggies

    13) Repeat all layers 2 more times. Sprinkle the final layer generously with cheese. Use at least ½ and ¼ cups of Mozzarella cheese.

    Sprinkle the enchilada casserole generously with shredded Mozzarella cheese

    14) Cover with foil.

    Cover the casserole dish with aluminum foil

    15) Bake at 375 F in the preheated oven for 25 minutes covered. Then remove foil. Bake for 10 more minutes uncovered.

    This is what the black bean and butternut squash enchilada casserole looks like right out of the oven:

    Mexican enchilada casserole right after baking

    Let it cool a little bit, then slice it right in the casserole pan.

    Black Bean Butternut Squash Casserole
    4.74 from 164 votes

    Black Bean and Butternut Squash Casserole

    If you love Mexican food or Southwestern recipes, you'll love this Black Bean and Butternut Squash Enchilada Casserole!  It makes a perfect weeknight dinner.    The casserole is made with gluten-free corn tortillas and lots of veggies.  
    Print Recipe Pin Recipe Save RecipeSaved!
    Prep Time 30 minutes mins
    Cook Time 35 minutes mins
    Total Time 1 hour hr 5 minutes mins
    Course Main Course
    Cuisine Mexican
    Servings 8 servings
    Calories per serving 458 kcal
    Author: Julia

    Ingredients

    Roasted Butternut Squash

    • 5 cups butternut squash cubed (store-bought, or make your own - see recipe below)
    • 2 tablespoons olive oil
    • ¼ teaspoon salt

    Vegetable mixture:

    • ½ onion , chopped
    • 1 tablespoon olive oil
    • 1 green bell pepper , chopped into cubes
    • 1 red bell pepper , chopped into cubes
    • 1 teaspoon cumin or more
    • 1 teaspoon chili powder or more
    • 8 oz corn (from the can, rinsed and drained)
    • 15 oz black beans (from the can, rinsed and drained)
    • ¼ teaspoon salt (add more, to taste)

    Other ingredients for assembling the casserole:

    • 1 cup salsa (to go on the bottom of the casserole dish)
    • 12 corn tortillas , 6 inch diameter each (4 corn tortillas per each of 3 layers)
    • 1 ½ cups sour cream (½ cup sour cream for each of 3 layers)
    • 1 cup enchilada sauce (if you're gluten free, make sure to buy the sauce without gluten!)
    • 1 ¾ cups Mozzarella cheese , shredded
    Prevent your screen from going dark

    Instructions 

    How to roast butternut squash:

    • Preheat the oven to 375 F. Line the baking sheet with aluminum foil and grease with 1 tablespoon of olive oil.
    • Peel the squash and slice it into ¾ inch cubes. You will only need about ½ of the medium size squash. 
    • Toss the squash cubes in a large bowl with 2 tablespoons olive oil and generously sprinkle with salt.
    • Place cubed butternut squash on the greased baking sheet and roast for about 30 minutes, until soft. 
    • Flip the squash cubes over midway through baking. Let it cool slightly.

    How to roast vegetables on the stove top:

    • Heat 1 tablespoon of olive oil in a large skillet on medium-high heat. 
    • Add chopped onion, chopped green bell pepper, and chopped red bell pepper, 1 teaspoon cumin, and 1 teaspoon chili powder.  
    • Roast the vegetables in olive oil and spices on high-medium heat for about 1 minute, until charred just a bit.
    • Add corn.  Add rinsed and drained black beans. Add roasted butternut squash. 
    • Season with ¼ teaspoon + ⅛ teaspoon salt and taste. Add more salt if needed. 
    • Add more chili powder or cumin, than indicated in the recipe, if needed.

    How to assemble the butternut squash casserole:

    • I used a casserole dish 11 inches long x 8.5 inches wide x 3 inches deep.  
    • Add 1 cup of salsa to the bottom of this 3-inch deep casserole dish and spread to coat the bottom evenly. 
    • Layer 1.  Top with 4 tortillas, overlapping to cover the bottom of the casserole dish.  Spread ⅓ of the vegetable mixture over the tortillas. Top with ½ cup sour cream, dropping it in small dollops all over, then carefully spread it over the veggies.  Pour ⅓ cup enchilada sauce evenly all over, at the same time spreading sour cream evenly all over. Sprinkle with ½ cup Mozzarella cheese. 
    • Repeat the layer described above 2 more times.    Total you will have 3 layers. On the final layer, add extra cheese: Sprinkle with ½ and ¼ cups Mozzarella cheese.
    • Cover with foil.
    • Bake at 375 F for 25 minutes covered.  Then remove foil.  Bake for 10 more minutes uncovered.

    Video

    Nutrition

    Nutrition Information
    Black Bean and Butternut Squash Casserole
    Amount per Serving
    Calories
    458
    % Daily Value*
    Fat
     
    21
    g
    32
    %
    Saturated Fat
     
    9
    g
    56
    %
    Cholesterol
     
    41
    mg
    14
    %
    Sodium
     
    850
    mg
    37
    %
    Potassium
     
    879
    mg
    25
    %
    Carbohydrates
     
    55
    g
    18
    %
    Fiber
     
    11
    g
    46
    %
    Sugar
     
    9
    g
    10
    %
    Protein
     
    16
    g
    32
    %
    Vitamin A
     
    10760
    IU
    215
    %
    Vitamin C
     
    53
    mg
    64
    %
    Calcium
     
    274
    mg
    27
    %
    Iron
     
    3.2
    mg
    18
    %
    * Percent Daily Values are based on a 2000 calorie diet.

    Nutrition Disclaimer:

    The nutritional information on this website is only an estimate and is provided for convenience and as a courtesy only. The accuracy of the nutritional information for any recipe on this site is not guaranteed. It should not be used as a substitute for a professional nutritionist’s advice.

    Keyword black bean casserole, butternut squash casserole
    « Butternut Squash and Spinach Lasagna
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    255.6K shares
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    Comments

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      Recipe Rating




    1. Elii Chapman

      March 27, 2019 at 12:27 am

      When I was getting the packages of frozen butternut squash out of the freezer. I didn't realize I accidentally added 1 cup of frozen mango to the recipe! Happy Accident!!! This added a wonderful contrasting taste every few bites. Very nice!

      Reply
      • Julia

        June 03, 2019 at 6:24 pm

        What an interesting twist to the recipe! Thank you for stopping by and sharing your feedback!

        Reply
    2. Cameron

      March 24, 2019 at 12:54 pm

      Wow! The idea of roasted butternut squash in a Mexican casserole sounded intriguing. I made a few tweaks and the combination of sweet squash with the Mexican flavors proved to be amazing. I omitted the bell peppers (only because I didn’t have any on hand) and cooked the rest of the veggies as described. I browned some ground turkey with taco seasoning and used just enchilada sauce on the bottom of the dish instead of salsa (again because I didn’t have salsa on hand). I used flour instead of corn tortillas, Greek yogurt instead of sour cream, and mexican cheese instead of mozzarella. I layered and cooked the casserole as as directed and it turned out absolutely delicious! Will definitely make again!

      Reply
      • Julia

        March 25, 2019 at 5:37 pm

        So glad you enjoyed this recipe! Thank you for sharing how you made this dish, including the substitutions. Using ground turkey and Greek Yogurt sounds delicious!

        Reply
    3. Richard Parker

      October 30, 2018 at 9:03 pm

      Tasted good

      Ideal for a splurge but far content = cardiac risk

      Reply
    4. Deana

      October 19, 2018 at 2:33 pm

      Thanks for the recipe. It looks delicious. And thank you so much for a calorie/nutrition breakdown! I really appreciate that.

      Reply
      • Julia

        October 23, 2018 at 11:20 pm

        You're very welcome, Deana! 🙂

        Reply
    5. Grizelda

      October 03, 2018 at 1:41 am

      haven't tried it yet but sounds good One comment is to reduce the repetitive shots of the layers. Just say repeat layers until top layer then top with the finishing ingredients. Make it seem more professionally presented. Thanks for the recipe ; its squash season now that October is here!

      Reply
      • Julia

        October 05, 2018 at 2:29 pm

        Yes, this post does have way too many photos! Enjoy the recipe!

        Reply
    6. Jenny

      September 03, 2018 at 6:37 pm

      I’ve made this many times! It’s so great and gooey and yummy

      Reply
      • Julia

        September 11, 2018 at 11:46 am

        So glad you've been enjoying this recipe! 🙂

        Reply
    7. Dyana

      July 07, 2018 at 12:14 pm

      I really want to try this as I am on a low cal diet. Can you tell the serving size for one serving? Thank you!

      Reply
      • Julia

        July 16, 2018 at 1:18 pm

        This casserole dish makes 8 servings. You can see on the photo in the recipe box how I sliced this casserole.

        Reply
    8. Meka

      June 26, 2018 at 12:00 am

      I’ve made this before and tonight is my second time making it! It’s so good and easy to make. I took my first casserole to a work potluck and my coworkers LOVES IT!!! My good friend at work really liked it so I’m going to surprise her with a big piece tomorrow. Honestly the pictures are really helpful thanks for posting.

      Reply
      • Julia

        July 01, 2018 at 4:38 pm

        Thank you for such a wonderful comment! So glad you and your coworkers enjoyed this recipe. And glad my pictures were helpful!

        Reply
    9. Glenda

      February 01, 2018 at 7:01 pm

      Looks really great and I am going to try it but 31 photos just jams and slows down my old computer.

      Reply
      • Julia

        February 24, 2018 at 3:43 pm

        Yes, I will be updating this recipe and removing many photos so that it is more user friendly.

        Reply
    10. PATTIE MULA

      January 14, 2018 at 4:37 pm

      The down fall on saying good is healthy, you don't share carb total???

      Reply
    11. Christine Burnam

      September 12, 2017 at 9:53 pm

      Awesome recipe! Got my hubby to eat vegetarian!!

      Reply
      • Julia

        November 02, 2017 at 4:11 pm

        Thank you so much! 🙂

        Reply
    12. Theresa

      August 23, 2017 at 8:26 am

      I made this with sweet potatoes because that's what I had in the house at the time. I also used GF tortillas. It was GREAT! I plan to make it this week again. I'm making zucchini tortillas and I'm going to try it with those. We are transitioning to vegetarian and my husband is on the fence about it. However eating amazing things like this is making it easier for him to do. Thanks for sharing with us!

      Reply
      • Julia

        November 03, 2017 at 6:33 pm

        Theresa, you are welcome! Great idea to use sweet potatoes. I used gluten free tortillas too (corn tortillas).

        Reply
    13. Sharon

      July 07, 2017 at 5:02 pm

      This recipe is great. I modified it to make it vegan by substituting vegan mozzarella sauce for the cheese and sour cream. I will probably use 2 cans of beans next time, and I threw in a couple of mushrooms I had. My husband loved it too!!

      Reply
    14. Sarah

      May 03, 2017 at 11:15 am

      What size can of beans, please!
      I am a vegan, will vegan sour cream work, or should I just skip it?

      Reply
    15. Kalpana

      March 31, 2017 at 11:13 pm

      Con I use puréed squash? The frozen kind.

      Thanks.

      Reply
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    Julia is the author of JuliasAlbum.com (a food blog focused on easy dinner recipes, pasta dishes, salads made with seasonal ingredients). In this photo, Julia is pictured wearing a yellow sweater against an Autumn background.

    Hi, I'm Julia!

    I am a full-time food blogger living in beautiful Colorado. I focus primarily on savory recipes (protein-based & fiber-rich main dishes, pasta, salads) using fresh & seasonal ingredients. A food blogger since 2012, I help home cooks create well-balanced and visually appealing dinners (many of which are 30-minute ONE-PAN meals). Find out more about me and my cooking philosophy. 

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