• Skip to main content
  • Skip to primary sidebar
Julia's Album
menu icon
go to homepage
  • Subscribe
  • Save Recipes!
  • About
  • Salads
  • Pasta
  • Chicken
  • Seafood
  • All Main Courses
  • Latest Recipes
  • Recipe Index
    • Facebook
    • Instagram
    • Pinterest
  • subscribe
    search icon
    Homepage link
    • Subscribe
    • Save Recipes!
    • About
    • Salads
    • Pasta
    • Chicken
    • Seafood
    • All Main Courses
    • Latest Recipes
    • Recipe Index
    • Facebook
    • Instagram
    • Pinterest
  • ×

    Black Bean and Butternut Squash Casserole

    By Julia | Updated: Jul 04, 2023 | Published: Nov 15, 2014 | 188 Comments

    255.6K shares
    • Facebook6.3K
    Jump to Recipe Print SaveSaved!

    This post may contain affiliate links. Read my disclosure policy.

    Black Bean and Butternut Squash Casserole - meatless and gluten-free dinner recipe! This Southwestern-style enchilada casserole is made with lots of vegetables and corn tortillas.

    black bean butternut squash enchilada casserole

    I love making recipes with butternut squash in a casserole dish, such as everyone's favorite butternut squash and spinach lasagna.  Butternut squash is a great vegetable with a rich flavor which works great in meatless recipes!  Take a look at beautiful butternut squash tortellini.

    Butternut Squash Casserole - meatless and gluten-free recipe

    • The vegetables are roasted in spices (cumin and chili powder). That adds lots of Southwestern flavor!
    • Other ingredients include green and red bell peppers, corn, salsa, enchilada sauce, sour cream, Mozzarella cheese, and corn tortillas.

    How to make butternut squash casserole gluten free

    • This recipe is gluten-free.  Use corn tortillas, and all other ingredients are also naturally gluten-free.
    • Use gluten-free enchilada sauce.  Keep in mind that some store-bought enchilada sauces can have gluten ingredients. So look carefully at the label.   You can also make your own gluten-free enchilada sauce or skip it in this recipe.

    Black Bean Butternut Squash Enchilada Casserole

    How to store butternut squash casserole

    • Store butternut squash casserole refrigerated and covered air-tight for up to 5 days.
    • This black bean and butternut squash enchilada casserole is amazing when hot right out of the oven.  It tastes even better the next day, or 3-4 days later! I just finished the last slice of this casserole 5 days later, and I can tell you that it was better than the 1st day! I guess all the flavors really blend while sitting in the refrigerator for days. 🙂

    enchilada casserole with sour cream, enchilada sauce, salsa, mozzarella cheese, black beans, butternut squash

    Other butternut squash recipes

    • Roasted Butternut Squash, Brussels Sprouts, Pecans, Cranberries
    • Butternut Squash and Spinach Salad with Pecans, Cranberries, Pomegranate Seeds
    • Butternut Squash Chili

    How to make black bean and butternut squash casserole:

    1) Heat 1 tablespoon olive oil in a large skillet on medium-high heat.

    2) Add chopped onion, chopped green bell pepper and chopped red bell pepper, and seasonings.

    3) Add corn to the skillet and roast the vegetables in olive oil on high heat until charred a bit.

    4) Add rinsed black beans.

    5) Add roasted butternut squash.

    6) Mix all vegetables, add more spices and salt, if needed.

    Mixing all vegetables for Mexican enchilada casserole, all clad pans, all-clad skillet, Williams-Sonoma pans, Williams-Sonoma skillet

    7) I used a casserole dish 11 inches x 8.5 inches x 3 inches deep. Add 1 cup of salsa to the bottom of the 3-inch deep casserole dish and spread to coat the bottom evenly.

    Put salsa on the bottom of the white baking dish

    8)  Start layers.  Layer 1: Place 4 corn tortillas over the salsa, overlapping to cover the bottom of the casserole dish.

    Place 4 corn tortillas over salsa

    9) Spread ⅓ of the vegetable mixture over the corn tortillas.

    Spread roasted vegetables over the tortillas in a white baking pan

    10) Top with ½ cup sour cream, dropping it in small dollops all over.  Then spread it carefully over the veggies.

    Spread sour cream over the roasted vegetables

    11) Pour ½ cup enchilada sauce evenly all over, spreading sour cream evenly all over.

    Pour enchilada sauce over the sour cream in the casserole dish

    12) Sprinkle with ½ cup Mozzarella cheese.

    Sprinkle Mozzarella cheese over sour cream and roasted veggies

    13) Repeat all layers 2 more times. Sprinkle the final layer generously with cheese. Use at least ½ and ¼ cups of Mozzarella cheese.

    Sprinkle the enchilada casserole generously with shredded Mozzarella cheese

    14) Cover with foil.

    Cover the casserole dish with aluminum foil

    15) Bake at 375 F in the preheated oven for 25 minutes covered. Then remove foil. Bake for 10 more minutes uncovered.

    This is what the black bean and butternut squash enchilada casserole looks like right out of the oven:

    Mexican enchilada casserole right after baking

    Let it cool a little bit, then slice it right in the casserole pan.

    Black Bean Butternut Squash Casserole
    4.74 from 164 votes

    Black Bean and Butternut Squash Casserole

    If you love Mexican food or Southwestern recipes, you'll love this Black Bean and Butternut Squash Enchilada Casserole!  It makes a perfect weeknight dinner.    The casserole is made with gluten-free corn tortillas and lots of veggies.  
    Print Recipe Pin Recipe Save RecipeSaved!
    Prep Time 30 minutes mins
    Cook Time 35 minutes mins
    Total Time 1 hour hr 5 minutes mins
    Course Main Course
    Cuisine Mexican
    Servings 8 servings
    Calories per serving 458 kcal
    Author: Julia

    Ingredients

    Roasted Butternut Squash

    • 5 cups butternut squash cubed (store-bought, or make your own - see recipe below)
    • 2 tablespoons olive oil
    • ¼ teaspoon salt

    Vegetable mixture:

    • ½ onion , chopped
    • 1 tablespoon olive oil
    • 1 green bell pepper , chopped into cubes
    • 1 red bell pepper , chopped into cubes
    • 1 teaspoon cumin or more
    • 1 teaspoon chili powder or more
    • 8 oz corn (from the can, rinsed and drained)
    • 15 oz black beans (from the can, rinsed and drained)
    • ¼ teaspoon salt (add more, to taste)

    Other ingredients for assembling the casserole:

    • 1 cup salsa (to go on the bottom of the casserole dish)
    • 12 corn tortillas , 6 inch diameter each (4 corn tortillas per each of 3 layers)
    • 1 ½ cups sour cream (½ cup sour cream for each of 3 layers)
    • 1 cup enchilada sauce (if you're gluten free, make sure to buy the sauce without gluten!)
    • 1 ¾ cups Mozzarella cheese , shredded
    Prevent your screen from going dark

    Instructions 

    How to roast butternut squash:

    • Preheat the oven to 375 F. Line the baking sheet with aluminum foil and grease with 1 tablespoon of olive oil.
    • Peel the squash and slice it into ¾ inch cubes. You will only need about ½ of the medium size squash. 
    • Toss the squash cubes in a large bowl with 2 tablespoons olive oil and generously sprinkle with salt.
    • Place cubed butternut squash on the greased baking sheet and roast for about 30 minutes, until soft. 
    • Flip the squash cubes over midway through baking. Let it cool slightly.

    How to roast vegetables on the stove top:

    • Heat 1 tablespoon of olive oil in a large skillet on medium-high heat. 
    • Add chopped onion, chopped green bell pepper, and chopped red bell pepper, 1 teaspoon cumin, and 1 teaspoon chili powder.  
    • Roast the vegetables in olive oil and spices on high-medium heat for about 1 minute, until charred just a bit.
    • Add corn.  Add rinsed and drained black beans. Add roasted butternut squash. 
    • Season with ¼ teaspoon + ⅛ teaspoon salt and taste. Add more salt if needed. 
    • Add more chili powder or cumin, than indicated in the recipe, if needed.

    How to assemble the butternut squash casserole:

    • I used a casserole dish 11 inches long x 8.5 inches wide x 3 inches deep.  
    • Add 1 cup of salsa to the bottom of this 3-inch deep casserole dish and spread to coat the bottom evenly. 
    • Layer 1.  Top with 4 tortillas, overlapping to cover the bottom of the casserole dish.  Spread ⅓ of the vegetable mixture over the tortillas. Top with ½ cup sour cream, dropping it in small dollops all over, then carefully spread it over the veggies.  Pour ⅓ cup enchilada sauce evenly all over, at the same time spreading sour cream evenly all over. Sprinkle with ½ cup Mozzarella cheese. 
    • Repeat the layer described above 2 more times.    Total you will have 3 layers. On the final layer, add extra cheese: Sprinkle with ½ and ¼ cups Mozzarella cheese.
    • Cover with foil.
    • Bake at 375 F for 25 minutes covered.  Then remove foil.  Bake for 10 more minutes uncovered.

    Video

    Nutrition

    Nutrition Information
    Black Bean and Butternut Squash Casserole
    Amount per Serving
    Calories
    458
    % Daily Value*
    Fat
     
    21
    g
    32
    %
    Saturated Fat
     
    9
    g
    56
    %
    Cholesterol
     
    41
    mg
    14
    %
    Sodium
     
    850
    mg
    37
    %
    Potassium
     
    879
    mg
    25
    %
    Carbohydrates
     
    55
    g
    18
    %
    Fiber
     
    11
    g
    46
    %
    Sugar
     
    9
    g
    10
    %
    Protein
     
    16
    g
    32
    %
    Vitamin A
     
    10760
    IU
    215
    %
    Vitamin C
     
    53
    mg
    64
    %
    Calcium
     
    274
    mg
    27
    %
    Iron
     
    3.2
    mg
    18
    %
    * Percent Daily Values are based on a 2000 calorie diet.

    Nutrition Disclaimer:

    The nutritional information on this website is only an estimate and is provided for convenience and as a courtesy only. The accuracy of the nutritional information for any recipe on this site is not guaranteed. It should not be used as a substitute for a professional nutritionist’s advice.

    Keyword black bean casserole, butternut squash casserole
    « Butternut Squash and Spinach Lasagna
    How to Cook Spaghetti Squash »
    255.6K shares
    • Facebook6.3K

    Reader Interactions

    Comments

      Submit your question or provide a review of the recipe + star rating RIGHT HERE. Cancel reply

      Your email address will not be published. Required fields are marked *

      Recipe Rating




    1. Mickie Meyer

      January 24, 2017 at 2:28 pm

      I made this for dinner last night and it was so yummy! This will definitely become apart of our meatless Monday meals!❣

      Reply
      • Julia

        January 31, 2017 at 12:04 am

        Thank you, Mickie! So glad you enjoyed this recipe!

        Reply
    2. Ashley DeWeerdt

      November 01, 2016 at 6:06 pm

      I just made and devoured a slice of this casserole!! It was amazing! I did manage to miss the sour cream in the ingredient list, but still delicious! I also did one less layer, using a longer pan but less deep. Can't wait to eat more as the week progresses 🙂

      Reply
      • Julia

        December 20, 2016 at 6:08 pm

        Thank you, Ashley, I am glad you liked the recipe! 🙂

        Reply
    3. Nancy Newell

      October 07, 2016 at 12:57 pm

      Has anyone tried freezing this casserole?

      Reply
      • Cook

        March 17, 2017 at 7:33 pm

        Did you ever get a response? I would worry about the cream.

        Reply
        • Julia

          March 29, 2017 at 1:12 am

          I have not frozen this, but I think freezing it will be OK (after you have baked the whole casserole and let it completely cool), despite the cream.

          Reply
    4. kevin

      September 22, 2016 at 2:16 am

      OH MAN, this recipe came together something special. Taste soooooo good. First time making an enchilada casserole and first time making a vegetarian dish. So, this is big on my perception of vegetarian meals. My variations were: using kidney beans because I mistakenly took them for black beans; I chose not to use sour cream because I was worried about the mushiness factor and the casserole not holding it's form when serving; I didn't use typical red enchilada sauce, but a sweeter enchilada sauce called Amalia's Cocina; I also used freshly cut corn. Thanks!!!

      Reply
    5. Kim

      September 10, 2016 at 12:13 am

      This is pretty good, but I will say that it took me a lot longer to prepare AND cook than the recipe calls for, despite using the exact same casserole dish. The 1st time I made it I roasted all the veggies the night before I assembled & baked this dish, which helped.

      Reply
    6. Devin

      May 05, 2016 at 9:17 pm

      I just made this for cinco de mayo and it turned out amazing!!! Followed the steps to the T. Would definitely recommend!

      Reply
    7. Dianne

      April 29, 2016 at 9:57 am

      This looks amazing! I think when I make this I might replace tortillas with layers of quinoa instead. I love quinoa and am trying to cut carbs from my diet.

      Reply
    8. Felice P

      April 25, 2016 at 10:36 pm

      This recipe is AWESOME!! Thank you! I used flat out wrap tortillas and light sour cream...also added a bit of lean ground pork for my meat loving hisband! So so good!!

      Reply
    9. Julie R

      January 22, 2016 at 3:09 pm

      My teenage daughter swears she doesn't like any vegetables, but gave this a try a at dinner last night. She liked it enough to pack leftovers of it in her lunch today! Very tasty and pretty darn healthy, too. I substituted nonfat Greek yogurt for the sour cream. I also used 1/2 cheese and 1/2 vegan cheese product. My husband has to watch his cholesterol, which is why I made these slight changes. Thanks for sharing this delicious vegetarian and gluten free meal!

      Reply
    10. Marie

      December 21, 2015 at 7:32 pm

      This was SO good! I don't even care that it was vegetarian. We will definitely make this again.

      Reply
    11. Bree

      November 25, 2015 at 10:40 am

      I was thinkinh about making it for thanksgiving. I was wondering if it tastes sweet because of the squash. Can anyone tell me what it tastes like?

      Reply
    12. Ira

      October 16, 2015 at 9:54 pm

      Can this dish be frozen and baked later?

      Reply
    13. Lindsay

      October 04, 2015 at 7:57 pm

      I just want to say that I tried this recipe this evening and it's AMAZING! I use plain greek yogurt instead of sour cream but other than that I followed the recipe exactly! Will definitely be in my regular dinner menu moving forward.

      Reply
    14. Nichole

      April 06, 2015 at 10:27 am

      can I use flour tortillas instead of corn?

      Reply
    « Older Comments
    Newer Comments »

    Primary Sidebar

    Julia is the author of JuliasAlbum.com (a food blog focused on easy dinner recipes, pasta dishes, salads made with seasonal ingredients). In this photo, Julia is pictured wearing a yellow sweater against an Autumn background.

    Hi, I'm Julia!

    I am a full-time food blogger living in beautiful Colorado. I focus primarily on savory recipes (protein-based & fiber-rich main dishes, pasta, salads) using fresh & seasonal ingredients. A food blogger since 2012, I help home cooks create well-balanced and visually appealing dinners (many of which are 30-minute ONE-PAN meals). Find out more about me and my cooking philosophy. 

    Connect with Julia on Social Media:

    • Facebook
    • Pinterest
    • Instagram
    Get Julia's new recipes by e-mail:
    Subscribe by E-mail

    Footer

    ↑ back to top

    Privacy and Disclosure

    • Privacy Policy
    • Disclaimer
    • Terms & Conditions
    • Affiliate Disclosure

    About

    • About
    • Featured On
    • Contact Me

    Connect on Social Media

    • Pinterest
    • Facebook
    • Instagram

    Copyright © 2012-2025 JuliasAlbum.com

    Site Design: Foodie Pro Theme by Feast Design Co.

    Rate This Recipe

    Your vote:




    A rating is required
    A name is required
    An email is required