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    Black Bean and Butternut Squash Casserole

    By Julia | Updated: Jul 04, 2023 | Published: Nov 15, 2014 | 188 Comments

    255.6K shares
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    Black Bean and Butternut Squash Casserole - meatless and gluten-free dinner recipe! This Southwestern-style enchilada casserole is made with lots of vegetables and corn tortillas.

    black bean butternut squash enchilada casserole

    I love making recipes with butternut squash in a casserole dish, such as everyone's favorite butternut squash and spinach lasagna.  Butternut squash is a great vegetable with a rich flavor which works great in meatless recipes!  Take a look at beautiful butternut squash tortellini.

    Butternut Squash Casserole - meatless and gluten-free recipe

    • The vegetables are roasted in spices (cumin and chili powder). That adds lots of Southwestern flavor!
    • Other ingredients include green and red bell peppers, corn, salsa, enchilada sauce, sour cream, Mozzarella cheese, and corn tortillas.

    How to make butternut squash casserole gluten free

    • This recipe is gluten-free.  Use corn tortillas, and all other ingredients are also naturally gluten-free.
    • Use gluten-free enchilada sauce.  Keep in mind that some store-bought enchilada sauces can have gluten ingredients. So look carefully at the label.   You can also make your own gluten-free enchilada sauce or skip it in this recipe.

    Black Bean Butternut Squash Enchilada Casserole

    How to store butternut squash casserole

    • Store butternut squash casserole refrigerated and covered air-tight for up to 5 days.
    • This black bean and butternut squash enchilada casserole is amazing when hot right out of the oven.  It tastes even better the next day, or 3-4 days later! I just finished the last slice of this casserole 5 days later, and I can tell you that it was better than the 1st day! I guess all the flavors really blend while sitting in the refrigerator for days. 🙂

    enchilada casserole with sour cream, enchilada sauce, salsa, mozzarella cheese, black beans, butternut squash

    Other butternut squash recipes

    • Roasted Butternut Squash, Brussels Sprouts, Pecans, Cranberries
    • Butternut Squash and Spinach Salad with Pecans, Cranberries, Pomegranate Seeds
    • Butternut Squash Chili

    How to make black bean and butternut squash casserole:

    1) Heat 1 tablespoon olive oil in a large skillet on medium-high heat.

    2) Add chopped onion, chopped green bell pepper and chopped red bell pepper, and seasonings.

    3) Add corn to the skillet and roast the vegetables in olive oil on high heat until charred a bit.

    4) Add rinsed black beans.

    5) Add roasted butternut squash.

    6) Mix all vegetables, add more spices and salt, if needed.

    Mixing all vegetables for Mexican enchilada casserole, all clad pans, all-clad skillet, Williams-Sonoma pans, Williams-Sonoma skillet

    7) I used a casserole dish 11 inches x 8.5 inches x 3 inches deep. Add 1 cup of salsa to the bottom of the 3-inch deep casserole dish and spread to coat the bottom evenly.

    Put salsa on the bottom of the white baking dish

    8)  Start layers.  Layer 1: Place 4 corn tortillas over the salsa, overlapping to cover the bottom of the casserole dish.

    Place 4 corn tortillas over salsa

    9) Spread ⅓ of the vegetable mixture over the corn tortillas.

    Spread roasted vegetables over the tortillas in a white baking pan

    10) Top with ½ cup sour cream, dropping it in small dollops all over.  Then spread it carefully over the veggies.

    Spread sour cream over the roasted vegetables

    11) Pour ½ cup enchilada sauce evenly all over, spreading sour cream evenly all over.

    Pour enchilada sauce over the sour cream in the casserole dish

    12) Sprinkle with ½ cup Mozzarella cheese.

    Sprinkle Mozzarella cheese over sour cream and roasted veggies

    13) Repeat all layers 2 more times. Sprinkle the final layer generously with cheese. Use at least ½ and ¼ cups of Mozzarella cheese.

    Sprinkle the enchilada casserole generously with shredded Mozzarella cheese

    14) Cover with foil.

    Cover the casserole dish with aluminum foil

    15) Bake at 375 F in the preheated oven for 25 minutes covered. Then remove foil. Bake for 10 more minutes uncovered.

    This is what the black bean and butternut squash enchilada casserole looks like right out of the oven:

    Mexican enchilada casserole right after baking

    Let it cool a little bit, then slice it right in the casserole pan.

    Black Bean Butternut Squash Casserole
    4.74 from 164 votes

    Black Bean and Butternut Squash Casserole

    If you love Mexican food or Southwestern recipes, you'll love this Black Bean and Butternut Squash Enchilada Casserole!  It makes a perfect weeknight dinner.    The casserole is made with gluten-free corn tortillas and lots of veggies.  
    Print Recipe Pin Recipe Save RecipeSaved!
    Prep Time 30 minutes mins
    Cook Time 35 minutes mins
    Total Time 1 hour hr 5 minutes mins
    Course Main Course
    Cuisine Mexican
    Servings 8 servings
    Calories per serving 458 kcal
    Author: Julia

    Ingredients

    Roasted Butternut Squash

    • 5 cups butternut squash cubed (store-bought, or make your own - see recipe below)
    • 2 tablespoons olive oil
    • ¼ teaspoon salt

    Vegetable mixture:

    • ½ onion , chopped
    • 1 tablespoon olive oil
    • 1 green bell pepper , chopped into cubes
    • 1 red bell pepper , chopped into cubes
    • 1 teaspoon cumin or more
    • 1 teaspoon chili powder or more
    • 8 oz corn (from the can, rinsed and drained)
    • 15 oz black beans (from the can, rinsed and drained)
    • ¼ teaspoon salt (add more, to taste)

    Other ingredients for assembling the casserole:

    • 1 cup salsa (to go on the bottom of the casserole dish)
    • 12 corn tortillas , 6 inch diameter each (4 corn tortillas per each of 3 layers)
    • 1 ½ cups sour cream (½ cup sour cream for each of 3 layers)
    • 1 cup enchilada sauce (if you're gluten free, make sure to buy the sauce without gluten!)
    • 1 ¾ cups Mozzarella cheese , shredded
    Prevent your screen from going dark

    Instructions 

    How to roast butternut squash:

    • Preheat the oven to 375 F. Line the baking sheet with aluminum foil and grease with 1 tablespoon of olive oil.
    • Peel the squash and slice it into ¾ inch cubes. You will only need about ½ of the medium size squash. 
    • Toss the squash cubes in a large bowl with 2 tablespoons olive oil and generously sprinkle with salt.
    • Place cubed butternut squash on the greased baking sheet and roast for about 30 minutes, until soft. 
    • Flip the squash cubes over midway through baking. Let it cool slightly.

    How to roast vegetables on the stove top:

    • Heat 1 tablespoon of olive oil in a large skillet on medium-high heat. 
    • Add chopped onion, chopped green bell pepper, and chopped red bell pepper, 1 teaspoon cumin, and 1 teaspoon chili powder.  
    • Roast the vegetables in olive oil and spices on high-medium heat for about 1 minute, until charred just a bit.
    • Add corn.  Add rinsed and drained black beans. Add roasted butternut squash. 
    • Season with ¼ teaspoon + ⅛ teaspoon salt and taste. Add more salt if needed. 
    • Add more chili powder or cumin, than indicated in the recipe, if needed.

    How to assemble the butternut squash casserole:

    • I used a casserole dish 11 inches long x 8.5 inches wide x 3 inches deep.  
    • Add 1 cup of salsa to the bottom of this 3-inch deep casserole dish and spread to coat the bottom evenly. 
    • Layer 1.  Top with 4 tortillas, overlapping to cover the bottom of the casserole dish.  Spread ⅓ of the vegetable mixture over the tortillas. Top with ½ cup sour cream, dropping it in small dollops all over, then carefully spread it over the veggies.  Pour ⅓ cup enchilada sauce evenly all over, at the same time spreading sour cream evenly all over. Sprinkle with ½ cup Mozzarella cheese. 
    • Repeat the layer described above 2 more times.    Total you will have 3 layers. On the final layer, add extra cheese: Sprinkle with ½ and ¼ cups Mozzarella cheese.
    • Cover with foil.
    • Bake at 375 F for 25 minutes covered.  Then remove foil.  Bake for 10 more minutes uncovered.

    Video

    Nutrition

    Nutrition Information
    Black Bean and Butternut Squash Casserole
    Amount per Serving
    Calories
    458
    % Daily Value*
    Fat
     
    21
    g
    32
    %
    Saturated Fat
     
    9
    g
    56
    %
    Cholesterol
     
    41
    mg
    14
    %
    Sodium
     
    850
    mg
    37
    %
    Potassium
     
    879
    mg
    25
    %
    Carbohydrates
     
    55
    g
    18
    %
    Fiber
     
    11
    g
    46
    %
    Sugar
     
    9
    g
    10
    %
    Protein
     
    16
    g
    32
    %
    Vitamin A
     
    10760
    IU
    215
    %
    Vitamin C
     
    53
    mg
    64
    %
    Calcium
     
    274
    mg
    27
    %
    Iron
     
    3.2
    mg
    18
    %
    * Percent Daily Values are based on a 2000 calorie diet.

    Nutrition Disclaimer:

    The nutritional information on this website is only an estimate and is provided for convenience and as a courtesy only. The accuracy of the nutritional information for any recipe on this site is not guaranteed. It should not be used as a substitute for a professional nutritionist’s advice.

    Keyword black bean casserole, butternut squash casserole
    « Butternut Squash and Spinach Lasagna
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    255.6K shares
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    Comments

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      Recipe Rating




    1. Becky

      October 22, 2020 at 4:57 pm

      We loved the casserole. My grandkids couldn't get enough of it. I made a second one, and wondered if it freezes well? Thanks

      Reply
    2. Gwen Cameron

      September 16, 2020 at 7:24 pm

      I made this casserole with sweet potatoes as the store did not have butternut squash. I used fresh mozzarella cheese and it was so delicious. I used Paul Newman's pineapple salsa on the bottom. This is the best casserole. It is so filing. Thank you for sharing!

      Reply
    3. Jo

      September 16, 2020 at 5:27 am

      Hi
      I would like to try this I put only have wheat tortillas. We are not gluten free so no problem there, but would they work ok please. Early reply would be appreciated as I want to make for dinner.
      Thank you, recipe looks lovely

      Reply
    4. Carolina

      September 15, 2020 at 3:00 pm

      This is my second time making this amd we love it so much! I avoided a grocery trip by substituting black beans with garbanzo beans (mashed a little), used only about .5 cups sour cream, and twice the corn. Totally versatile recipe & everyone had seconds!

      Reply
    5. MA

      August 04, 2020 at 9:31 am

      Very snarky comment, Samantha!

      Pro-tip: How about" thank you" for the delicious recipe?

      Reply
    6. Tina

      June 26, 2020 at 1:38 pm

      I made this yesterday. My only modification was using salsa in the layers instead of enchilada sauce because I had no enchilada sauce. My partner and I loved it. The flavors were amazing. I highly recommend this recipe. I will definitely be making this again.

      Reply
    7. Martha

      June 19, 2020 at 8:51 pm

      Could I OMIT THE SOUR CREAM SINCE I HATE IT...BUT I LOVE EVERYTHING ELSE???

      Reply
    8. Cookie

      June 14, 2020 at 10:44 pm

      I need to change the recipe to make vegan sour cream. However I am looking forward to making.

      Reply
    9. Liz

      June 02, 2020 at 9:15 pm

      I like how you have this laid out. Pictures with instructions. Thank you! Delicious!

      Reply
    10. Samantha Goldfingers

      May 18, 2020 at 11:35 am

      Please - get to the point faster.

      The oversized pictures are completely unnecessary. It's painful to scroll through the story nonsense to find the actual recipe.

      Pro-tip: put the pictures at the end.

      Reply
      • Zandra

        July 08, 2020 at 9:58 am

        Duh, did you see jump to recipe at top. Zandra

        Reply
        • M

          October 11, 2020 at 1:28 pm

          5 Stars!

          Reply
    11. Etta

      January 09, 2020 at 2:17 pm

      My family was SOOOO sceptical. I've got 4 kids under the age of 10 and they were not excited when I told them what was for dinner. To my surprise they cleaned their plates! It was so delicious! My husband and I fought over the leftovers haha

      Reply
      • Julia

        February 19, 2020 at 10:44 pm

        Your comment made my day! WOW! So glad A WHOLE FAMILY liked this dish!

        Reply
    12. Kate

      December 13, 2019 at 8:16 pm

      Just thought I’d finally comment and say I LOVE THIS RECIPE!!! I’ve been making it pretty regularly for a couple years. SOOOO good!!!! My husband loves it too! Making it again tonight for dinner. Can’t wait to eat it 😀

      Reply
      • Julia

        February 20, 2020 at 6:59 pm

        Thank you, Kate, for such a positive comment! So glad you've enjoyed this recipe!

        Reply
    13. brian crandall

      November 15, 2019 at 4:39 pm

      I added a layer of fresh spinach & mushroom, + added green chilis to the mix in the pan. The flavor is amazing. The variety of ingredients presents a wide spectrum of different nutrients with the butternut squash, red & green bell peppers, onion, spinach, mushroom, green chilis, black beans and corn. I omitted the sour cream and went light on cheese. Next time I think I'll try baking the bell peppers with the butternut squash, rather than cook them in oil, in an attempt to make it a bit more healthy. The results of my first attempt is a flavor that is fantastic. I am the most incompetent cooker-of-things that has ever been. The step by step instructions with pictures made it so that even I could make this enchilada casserole.

      Reply
      • Julia

        February 21, 2020 at 1:47 pm

        So glad you enjoyed this recipe and liked the ingredients. I love the addition of spinach and mushrooms!

        Reply
    14. Yvette

      October 28, 2019 at 1:09 am

      I love how detailed this recipe is with all the photos and video!! It helps for someone that doesn't cook too often 🙂

      Reply
      • Julia

        October 30, 2019 at 8:44 pm

        So glad you found this recipe useful!

        Reply
    15. Dia

      May 10, 2019 at 1:05 am

      Hi
      Just wondering how the casserole does if frozen and reheated?
      Thanks

      Reply
      • Julia

        June 03, 2019 at 2:41 pm

        This casserole freezes well and reheats well!

        Reply
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    Hi, I'm Julia!

    I am a full-time food blogger living in beautiful Colorado. I focus primarily on savory recipes (protein-based & fiber-rich main dishes, pasta, salads) using fresh & seasonal ingredients. A food blogger since 2012, I help home cooks create well-balanced and visually appealing dinners (many of which are 30-minute ONE-PAN meals). Find out more about me and my cooking philosophy. 

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